When I did mine, I had one stubborn one too. It is surprising because they arn't in that far at all. A propane torch was enough for mine, and locked on with a set of vice grips... and out she came
Actually if I had to do it all over again, i'd buy new studs and put them in. Would make the install a lot easier than than trying to balance the header, hold the gasket, and somehow manage to get a bolt started. Extra sets of hands do come in handy with the install. If you kept the two center studs, just hang the gasket, hang the header, and your all set.
Also, not sure if you have tried the double nut method for removing the stud. Get two grade 8 nuts that are the right size... (to long ago to remember the size off hand). start them both on the stud, and hold the bottom nut still while you tighten the top nut against it. I use a box end hand wrench on the inside nut. Now with the nuts tightened against each other... while the box end is still on the inside nut, act like you want to remove the nut (loosen). If you did it right, hopefully the stud twisted out. When I tried that method, i accidentally grabbed grade 1 not thinking, and i stripped the nuts out against each other. Didn't bother the stud one bit. Your call on what method to use, but remember heat is your friend
Good luck!